Anyone besides me read the opinion the judge wrote? Because I did.
It's pretty much a thorough beat down of the Navy, its vaccine mandate, the implementation, the "religious exemption" that doesn't actually exist, the extralegal threats against and punishment to servicemembers for applying (which by applicable law, UCMJ, etc. is entirely legal and within their rights to do so), and the fact that the process is designed to uniformly (without exception -- literally none granted) deny the requests, and the futile administrative process that active duty services members must try to navigate while actively being punished.
Put a little more simply, the poster on this thread arguing that the chain of command has somehow been disrespected is on the business end of a mud-holing by well-written opinion from a federal judge and reality itself. That poster is either a troll or a crazy person that should be ignored.