Hopefully the shakedown of the wiring harness will reveal what the issue is, but I would think you could read these trucks with a standard obdII reader at the plugin under the dash below your ashtray then look up what the code## was. not sure because I always used my superchips and hypertech programers to read codes. Most codes are held for about 10 starts of the ignition.If any of your buddies have a programer on thier truck borrow thiers , it doesn't have to be married to the truck to read a code. Also could the icp(for injection press. control) sensor be intermittent,it is at the front of the block at the top and screws into the block w/ 1- 3 wire electrical connection, so shake that harness a little when you do the other. 1 last tip go to thedieselstop.com and go to the forum for your year model truck and 7.3 to look for similar issues or post on there describing your issue, I fixed numerous problems on 3 different 7.3's for 14 years using this site for help and tips, and only once did we have to get a mechanic and that was because it turned out needing a little extra troubleshooting that finally pointed out the # 8 injector which is common on these engines and sometimes gives an indication as you have described.
[This message has been edited by jaseev (edited 7/3/2012 5:49p).]