Let's get some more detail. What kind of commercial metal roof do you have ? U panel, R Panel, 2" structural standing seam?
We've done them and there are options. For example, a dilapidated exposed fastener R panel can be overlaid with standing seam but filling the original panel gaps with structural and insulating products to creat a flat surface to attach the metal to. It prevents having to demo and tear off and provides additional insulating properties to the roof and you end up with a new metal on top. It's done frequently. It's a thing.
Infinity Roofing - https://linqapp.com/jason_duke --- JasonDuke@InfinityRoofer.com --- https://infinityrooferjason.blogspot.com/