Clay Kolby is building my house right now.
www.claykolby.com The guy does amazing work and is great to work with. Most of his stuff is in the 4Ksqft/$400K-$500K range, but he can obviously do anything. Let me know if you'd like to see any pics of his jobs - I've got a pile of pics of several of his different jobs, including my own place. The benefit of using Clay is that his wife works for him. She helps with all of the selections (paint, carpet, hardware, fixtures, etc), so it really helps cut out the runaround - she knows what to get and knows where to get it. It really makes things go smoothly.
Also, Dennis Husfeld does really good work. He built Fleen's house a year or so ago and it was a pretty nice setup, from what I understand.