I haven't played Briarcest/Phillips/City course in a few months but I really enjoy the layout of that course and the 19th hole/Quarry is pretty nice.
Navasota is so-so. Pretty chill course and fairly wide open for bad golfers like me.
I played Brenham once a few months ago and really liked that course as well but it was in so/so shape.
Obviously if you can afford or get on the private courses in town they are the best. The consensus is that Miramont is best, then Traditions and Pebble Creek are about equal although Traditions is considered more difficult.
edit: The campus course is considered by most to be the best public in town but I prefer Briarcrest due to the layout & trees and more hills. The campus course was awful last weekend with freshly stamped greens but they should be much better this weekend and I'm actually playing it again Saturday afternoon.
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